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Overview

マクロジェンは、様々なシーケンシングプラットフォームに特化した解析ソフトウェアを利用して、 Standard Data Report と解析結果を提供します。 専門の解析サービスチームがお客様の多様なニーズに対応するカスタム解析も提供できます。また、遺伝変異の確認から比較解析に至るまで、付加的な解析を行っています。


NGS platform and Application available at Macrogen

  • De novo Assembly / Gene Annotation
  • Variant Calling (SNP, In/Del) and Annotation
  • Structural Variation (CNV and SV) and Annotation
  • Expression Profiles
  • Differentially Expressed Genes (DEGs) / miRNA
    Enrichment Profilies / Gene Annotation
  • Gene Ontology / Gene Set Analysis / Pathway Analysis
  • Operational Taxonomic Unit (OTU) Diversity

Bio Informatics Services


Sequence
Methodology
Sequence
Only
Standard Analysis Special Analysis
De novo
Sequencing
FASTQ De novo assembly 1. Variant Calling (SNP, In/Del)
2. Gene Prediction
3. Gene Annotation
Whole
Genome
Resequencing
FASTQ 1.Alignment and summary of data production
2.Variant Calling (SNP, In/Del) and Annotation
1.Comparative Analysis
2.Disease Analysis
3.Structural Variation (CNV and SV) and Annotation
Exome /Target
Sequencing
FASTQ 1.Alignment and summary of data production
2.Variant Calling (SNP, In/Del) and Annotation
1.Comparative Analysis
2.Disease Analysis
Transcriptome
Resequencing
FASTQ 1.Expression Profiles
2.Differentially Expressed Genes (DEGs)
3.Fusion Gene
1.Gene Set Analysis
2.Variant Calling and Annotation
3.Comparative Analysis
Transcriptome
De Novo
Sequencing
FASTQ 1.De novo Assembly
2.Alignment and Statistics
3.Expression Profiling
1.Gene Annotation
2.Gene Set Analysis
3.Variant Calling (SNP, In/Del) and Annotation
smRNA
Sequencing
FASTQ 1.Expression Profiles
2.Novel smRNA
3.Differentially Expressed miRNA
1.Target Prediction of Known and Novel miRNA
2.Gene Set Analysis
3.Comparative Analysis
Metagenome
16s rDNA
Sequencing
FASTQ 1.OTU Counting
2.OTU Diversity
Comparative Analysis
Metagenome
Shotgun
Sequencing
FASTQ 1.De novo assembly
2.Blastx
1.Gene Prediction
2.OTU counting (16S rDNA or other
housekeeping genes)
3.Function assignment to each gene candidate
4.Constructing metabolic pathways
5.Statistical analysis of two or more
meta-genomic samples
ChIP
Sequencing
FASTQ 1.Enrichment Peak Profiles and Gene Annotation
2.Differentially Enriched Peaks and Gene Annotation
3.Multiple Alignment and Consensus Motif
1.Gene Set Analysis
2.Comparative Analysis
MBD
Sequencing
FASTQ 1.Global Methylation Profiles
2.Specific Methylation Profiles
- Protein-Coding Genes
- CG Islands
- Several Repeated Sequences
3. Differentially Methylation Regions (DMR)
1.DMR-Associated Genes
2.Gene Set Analysis
3.Comparative Analysis




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